Lab
Class MicrobeIdentification

This class documents each Microbiology identification observation (note that in this case, "Microbiology" includes Bacteriology, Mycobacteriology, Mycology, Parasitology, and Virology).

Attributes
AntibioticSensitivityObservationEvent antibioticSensitivity antibioticSensitivity

The results of a drug challenge. A drug challenge tests the susceptibility of a culture of the identified organism to an antibiotic.

String description description

An optional textual description of the microbial observation, which may include other items of note.

Organism organismObserved organismObserved

The organism identified as being present within a microbiology observation.

«PQ» Quantity organismQuantity organismQuantity

The quantification the organism detected. e.g., >100,000 CFU/ML.
"Contains the value observed by the observation producer.... It is not a required field because some systems will report only the Interpretation Codes.... This field may repeat for multipart, single answer results." - HL7 Version 2.8, OBX-5.

ReferenceRange referenceRange referenceRange

Anitbiotic Sensitivity observations generally do not have a reference range, so the inherited reference range is being constrained out. FHIR and CIMI both are designed so any Observation can have a reference range, but generally only numeric observations use reference ranges.

Attributes inherited from FHIM::Lab::LaboratoryObservation FHIM::Lab::LaboratoryObservation
dateDeemedReportable dateDeemedReportable, dateTimeOfAnalysis dateTimeOfAnalysis, laboratoryDirector laboratoryDirector, probability probability, reReleaseReason reReleaseReason, reportDate reportDate, transcription transcription, userDefinedAccessCheck userDefinedAccessCheck, topicCode topicCode, subId subId

Attributes inherited from FHIM::ClinicalObservation::ObservationStatement FHIM::ClinicalObservation::ObservationStatement
basedOn basedOn, bodySite bodySite, category category, componentObservation componentObservation, dataAbsentReason dataAbsentReason, dateTime dateTime, dateTimeIssued dateTimeIssued, deltaFlag deltaFlag, description description, deviceInstance deviceInstance, evaluationProcedure evaluationProcedure, exceptionValue exceptionValue, interpretationEvent interpretationEvent, method method, multimedia multimedia, observed observed, observedCharacteristic observedCharacteristic, referenceRange referenceRange, reliability reliability, resultStatus resultStatus, specimen specimen, value value, derivedFrom derivedFrom, hasMember hasMember, partOf partOf

Attributes inherited from FHIM::Common::ClinicalStatement FHIM::Common::ClinicalStatement
clinicalDataSource clinicalDataSource, contentVersion contentVersion, contextCode contextCode, encounter encounter, note note, recordStatus recordStatus, relatedClinicalInformation relatedClinicalInformation, sourceRecordType sourceRecordType, sourceSystem sourceSystem, subjectGroup subjectGroup, subjectOfInformation subjectOfInformation, subjectOfRecord subjectOfRecord, temporalContext temporalContext, topicCode topicCode, cosigned cosigned, recorded recorded, signed signed, verified verified

Attributes inherited from FHIM::Common::InformationEntry FHIM::Common::InformationEntry
identifier identifier

Properties:

Alias
Classifier Behavior
Is Abstractfalse
Is Activefalse
Is Leaffalse
Keywords
NameMicrobeIdentification
Name Expression
NamespaceLab
Owned Template Signature
OwnerLab
Owning Template Parameter
PackageLab
Qualified NameFHIM::Lab::MicrobeIdentification
Representation
Stereotype
Template Parameter
VisibilityPublic

Attribute Details

 antibioticSensitivity
Public AntibioticSensitivityObservationEvent antibioticSensitivity

The results of a drug challenge. A drug challenge tests the susceptibility of a culture of the identified organism to an antibiotic.

Constraints:
Properties:

AggregationNone
Alias
AssociationmicrobeIdentification_antibioticSensitivity
Association End
ClassMicrobeIdentification
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquefalse
Keywords
Lower0
Lower Value(0)
Multiplicity*
NameantibioticSensitivity
Name Expression
NamespaceMicrobeIdentification
Opposite
OwnerMicrobeIdentification
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::MicrobeIdentification::antibioticSensitivity
Stereotype
Template Parameter
TypeAntibioticSensitivityObservationEvent
Upper*
Upper Value(*)
VisibilityPublic


 description
Public String description

An optional textual description of the microbial observation, which may include other items of note.

Constraints:
Properties:

AggregationNone
Alias
Association
Association End
ClassMicrobeIdentification
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquetrue
Keywords
Lower0
Lower Value(0)
Multiplicity0..1
Namedescription
Name Expression
NamespaceMicrobeIdentification
Opposite
OwnerMicrobeIdentification
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::MicrobeIdentification::description
Stereotype
Template Parameter
TypeString
Upper1
Upper Value(1)
VisibilityPublic


 organismObserved
Public Organism organismObserved

The organism identified as being present within a microbiology observation.

Constraints:
Properties:

AggregationNone
Alias
AssociationmicrobeIdentification_organismObserved
Association End
ClassMicrobeIdentification
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquefalse
Keywords
Lower0
Lower Value(0)
Multiplicity0..1
NameorganismObserved
Name Expression
NamespaceMicrobeIdentification
Opposite
OwnerMicrobeIdentification
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::MicrobeIdentification::organismObserved
Stereotype
Template Parameter
TypeOrganism
Upper1
Upper Value(1)
VisibilityPublic


 organismQuantity
Public «PQ» Quantity organismQuantity

The quantification the organism detected. e.g., >100,000 CFU/ML.
"Contains the value observed by the observation producer.... It is not a required field because some systems will report only the Interpretation Codes.... This field may repeat for multipart, single answer results." - HL7 Version 2.8, OBX-5.

Constraints:
Properties:

AggregationNone
Alias
Association
Association End
ClassMicrobeIdentification
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquetrue
Keywords
Lower0
Lower Value(0)
Multiplicity0..1
NameorganismQuantity
Name Expression
NamespaceMicrobeIdentification
Opposite
OwnerMicrobeIdentification
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::MicrobeIdentification::organismQuantity
Stereotype
Template Parameter
Type«PQ» Quantity
Upper1
Upper Value(1)
VisibilityPublic


 referenceRange
Public ReferenceRange referenceRange

Anitbiotic Sensitivity observations generally do not have a reference range, so the inherited reference range is being constrained out. FHIR and CIMI both are designed so any Observation can have a reference range, but generally only numeric observations use reference ranges.

Constraints:
Properties:

AggregationNone
Alias
Association
Association End
ClassMicrobeIdentification
Datatype
Default
Default Value
Is Compositefalse
Is Derivedfalse
Is Derived Unionfalse
Is Leaffalse
Is Orderedfalse
Is Read Onlyfalse
Is Staticfalse
Is Uniquetrue
Keywords
Lower0
Lower Value(0)
Multiplicity0
NamereferenceRange
Name Expression
NamespaceMicrobeIdentification
Opposite
OwnerMicrobeIdentification
Owning Association
Owning Template Parameter
Qualified NameFHIM::Lab::MicrobeIdentification::referenceRange
Stereotype
Template Parameter
TypeReferenceRange
Upper0
Upper Value(0)
VisibilityPublic